The problem shows up the first time you boot the clone. The CPU usage goes to 100% and stays there. On my system, Hardware Growler and Super Get Info, which are set to run at setup, quit unexpectedly, and I cannot get Activity Monitor to run, it also quits unexpectedly after loading for over 5 minutes. These symptoms are a clue that the clone is unusable. I don't see that you need to test every application to see if they all run properly, it is obvious when you boot the clone if it is unusable, then, if you run prebinding and all is well, I would surmise that you have the answer to the question.
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